Hello itsjustme -
Without looking at the specific listings involved, there is no way to determine what might be causing the message for the listing to be ineligible. If you are relisting listings that have an old template on them it is possible that the template has active content, however, recently we removed any templates from the selection area that might have caused issues relating to active content, and soon we will be releasing a new suite of templates that are wholly free of active content and are mobile friendly.
If you have not received a notification in your account that lets you know the migration process has completed for your account, the tool has not been run for your account yet. Please also keep in mind that the tool can only make adjustments to listing that are active at the time that it runs. If you use Bulk Relist to relist items that were not active at that time, those listing would return to eBay as they had been. In this case you can always file a support case and ask us to run the command manually for your account. Note that if you post again from Saved or use Edit and Relist you items should then go back up to eBay using the compliant tools (the scrolling gallery and counter).
In order to look into this or have us run the command relating to active content again, please feel free to file a support case and we'll be happy to assist you further.